MapDeCoDe Helping you find the best tools for your NGS mapping tasks.
List of all recorded mappers :
Name | Last update* | Benchmarked |
---|---|---|
ERNE-MAP | Unknown | No |
AGILE | Unknown | No |
CleaveLand | Unknown | No |
ProbeMatch | Unknown | No |
Exonerate | Unknown | No |
DynMap | Unknown | No |
ABMapper | Unknown | No |
BWT-SW | Unknown | No |
VelociMapper | Unknown | No |
FANGS | Unknown | No |
CloudBurst | Unknown | No |
Vmatch | Unknown | No |
DrFast | Unknown | No |
Pash | Unknown | No |
MOM | Unknown | No |
KARMA | Unknown | No |
RTG Sequence Alignment | Unknown | No |
SNIP-Seq | Unknown | No |
CokusAlignment | Unknown | No |
BOAT | Unknown | No |
X-Mate | Unknown | No |
Mapreads | Unknown | No |
CLC read mapper | Unknown | No |
CloudAligner | Unknown | No |
TMAP | 2014-10-04 | No |
PASS | 2014-03-14 | No |
TopHat | 2014-03-04 | No |
GMAP | 2014-02-20 | No |
GSNAP | 2014-02-20 | No |
Segemehl | 2014-02-07 | No |
MapSplice | 2014-01-27 | No |
mrsFAST | 2014-01-14 | No |
Stampy | 2013-12-14 | No |
Bismark | 2013-12-03 | No |
Cushaw | 2013-10-29 | No |
SToRM | 2013-10-25 | No |
CRAC | 2013-09-30 | No |
BarraCUDA | 2013-09-26 | No |
MOSAIK | 2013-09-20 | No |
SMALT | 2013-07-16 | No |
RUM (RNA-Seq Unified Mapper) | 2013-06-03 | No |
BatMeth | 2013-04-01 | No |
mrFAST | 2013-04-01 | No |
SNP-o-matic | 2013-03-22 | No |
PALMapper | 2013-03-07 | No |
Bowtie2 | 2013-02-21 | Yes |
STAR | 2013-02-11 | No |
BSMAP | 2013-01-01 | No |
ReadAligner | 2012-12-13 | No |
Sniper | 2012-12-04 | No |
WHAM | 2012-11-26 | No |
REAL | 2012-11-22 | No |
GenomeMapper | 2012-10-30 | No |
GEM | 2012-10-28 | Yes |
ChIP-Seq | 2012-08-29 | No |
RazerS | 2012-08-22 | No |
Galign | 2012-08-01 | No |
SHRiMP | 2012-08-01 | No |
BRAT | 2012-07-03 | No |
PASSion | 2012-06-25 | No |
BRAT BW | 2012-03-13 | No |
SOCS | 2012-02-04 | No |
PerM | 2012-01-01 | Yes |
MUMmer | 2011-12-17 | No |
B-Solana | 2011-11-01 | No |
GASSST | 2011-08-01 | Yes |
GNUMAP | 2011-07-25 | No |
BFAST | 2011-04-22 | Yes |
SOAPaligner soap2 | 2011-02-14 | Yes |
FindPeaks | 2011-01-10 | No |
QPalma | 2010-12-20 | No |
HMMSplicer | 2010-11-25 | No |
SpliceMap | 2010-10-23 | No |
BWA | 2010-10-17 | Yes |
CASHX | 2010-10-15 | No |
Bowtie | 2010-09-07 | Yes |
SSAHA2 | 2010-09-01 | Yes |
BS SEEKER | 2010-07-21 | No |
Novoalign | 2010-06-16 | Yes |
VerJinxer | 2010-05-01 | No |
Supersplat | 2010-04-16 | No |
ZOOM | 2010-03-25 | No |
MPScan | 2010-02-23 | Yes |
RMAP | 2009-11-06 | No |
PatMaN | 2009-10-21 | No |
RNA-Mate | 2009-06-21 | No |
MicroRazerS | 2009-06-12 | No |
Slider | 2009-06-09 | No |
SeqMap | 2009-01-12 | No |
Nexalign | 2008-05-11 | No |
MAQ | 2008-04-27 | No |
PyroMap | 2007-06-28 | No |
SSAHA | 2004-03-01 | No |
* : We try to make sure these are as up-to-date as possible but errors can occur.