MapDeCoDe Helping you find the best tools for your NGS mapping tasks.
List of all recorded mappers :
| Name | Last update* | Benchmarked |
|---|---|---|
| ABMapper | Unknown | No |
| AGILE | Unknown | No |
| B-Solana | 2011-11-01 | No |
| BarraCUDA | 2013-09-26 | No |
| BatMeth | 2013-04-01 | No |
| BFAST | 2011-04-22 | Yes |
| Bismark | 2013-12-03 | No |
| BOAT | Unknown | No |
| Bowtie | 2010-09-07 | Yes |
| Bowtie2 | 2013-02-21 | Yes |
| BRAT | 2012-07-03 | No |
| BRAT BW | 2012-03-13 | No |
| BS SEEKER | 2010-07-21 | No |
| BSMAP | 2013-01-01 | No |
| BWA | 2010-10-17 | Yes |
| BWT-SW | Unknown | No |
| CASHX | 2010-10-15 | No |
| ChIP-Seq | 2012-08-29 | No |
| CLC read mapper | Unknown | No |
| CleaveLand | Unknown | No |
| CloudAligner | Unknown | No |
| CloudBurst | Unknown | No |
| CokusAlignment | Unknown | No |
| CRAC | 2013-09-30 | No |
| Cushaw | 2013-10-29 | No |
| DrFast | Unknown | No |
| DynMap | Unknown | No |
| ERNE-MAP | Unknown | No |
| Exonerate | Unknown | No |
| FANGS | Unknown | No |
| FindPeaks | 2011-01-10 | No |
| Galign | 2012-08-01 | No |
| GASSST | 2011-08-01 | Yes |
| GEM | 2012-10-28 | Yes |
| GenomeMapper | 2012-10-30 | No |
| GMAP | 2014-02-20 | No |
| GNUMAP | 2011-07-25 | No |
| GSNAP | 2014-02-20 | No |
| HMMSplicer | 2010-11-25 | No |
| KARMA | Unknown | No |
| Mapreads | Unknown | No |
| MapSplice | 2014-01-27 | No |
| MAQ | 2008-04-27 | No |
| MicroRazerS | 2009-06-12 | No |
| MOM | Unknown | No |
| MOSAIK | 2013-09-20 | No |
| MPScan | 2010-02-23 | Yes |
| mrFAST | 2013-04-01 | No |
| mrsFAST | 2014-01-14 | No |
| MUMmer | 2011-12-17 | No |
| Nexalign | 2008-05-11 | No |
| Novoalign | 2010-06-16 | Yes |
| PALMapper | 2013-03-07 | No |
| Pash | Unknown | No |
| PASS | 2014-03-14 | No |
| PASSion | 2012-06-25 | No |
| PatMaN | 2009-10-21 | No |
| PerM | 2012-01-01 | Yes |
| ProbeMatch | Unknown | No |
| PyroMap | 2007-06-28 | No |
| QPalma | 2010-12-20 | No |
| RazerS | 2012-08-22 | No |
| ReadAligner | 2012-12-13 | No |
| REAL | 2012-11-22 | No |
| RMAP | 2009-11-06 | No |
| RNA-Mate | 2009-06-21 | No |
| RTG Sequence Alignment | Unknown | No |
| RUM (RNA-Seq Unified Mapper) | 2013-06-03 | No |
| Segemehl | 2014-02-07 | No |
| SeqMap | 2009-01-12 | No |
| SHRiMP | 2012-08-01 | No |
| Slider | 2009-06-09 | No |
| SMALT | 2013-07-16 | No |
| SNIP-Seq | Unknown | No |
| Sniper | 2012-12-04 | No |
| SNP-o-matic | 2013-03-22 | No |
| SOAPaligner soap2 | 2011-02-14 | Yes |
| SOCS | 2012-02-04 | No |
| SpliceMap | 2010-10-23 | No |
| SSAHA | 2004-03-01 | No |
| SSAHA2 | 2010-09-01 | Yes |
| Stampy | 2013-12-14 | No |
| STAR | 2013-02-11 | No |
| SToRM | 2013-10-25 | No |
| Supersplat | 2010-04-16 | No |
| TMAP | 2014-10-04 | No |
| TopHat | 2014-03-04 | No |
| VelociMapper | Unknown | No |
| VerJinxer | 2010-05-01 | No |
| Vmatch | Unknown | No |
| WHAM | 2012-11-26 | No |
| X-Mate | Unknown | No |
| ZOOM | 2010-03-25 | No |
* : We try to make sure these are as up-to-date as possible but errors can occur.
