Description of the H3 dataset :

  • Description : 10 millions single end read. Mutations were added using an in house perl script using the H0 data set as reference.
  • Species : HG37.1
  • Simulated using : wgsim v0.3.0
  • Number of reads : 10000000
  • Read length : 40
  • Read pairing : Single End
  • Minimum insert size :
  • Maximum insert size :
  • Maximum mismatches : 3
  • Maximum number of indels : 0
  • Maximum indel size : 0
  • Maximum number of N per read : 10

Results visualisation

Mapped reads
Unique hits
Multiple hits
Rare hits

Results table

To see the command line used for this test, hover on the tool's name.
Name
GEM (v2)
  • 4.2
  • 02:53:00
  • 9999964
  • 36
  • 9360317
  • 639647
  • 8537985
  • 83872
  • 1461979
  • 555775
  • 970625
  • 267037
PerM (v0.3.9)
  • 13.82
  • 11:42:00
  • 9813247
  • 186753
  • 9813241
  • 6
  • 8496655
  • 2
  • 1316592
  • 4
  • 691086
  • 2
GASSST (v1.28)
  • 27.14
  • 23:59:00
  • 9673402
  • 326598
  • 9631509
  • 41893
  • 8193650
  • 5703
  • 1479752
  • 36190
  • 675725
  • 16210
SSAHA2 (v2.5.2)
  • 9.6
  • 23:59:00
  • 9999787
  • 213
  • 2798031
  • 7201756
  • 8286416
  • 5657797
  • 1713371
  • 1543959
  • 1498828
  • 1346710
BFAST (v0.6.5)
  • 9.68
  • 10:45:00
  • 9800549
  • 199451
  • 8997831
  • 802718
  • 8476476
  • 84019
  • 1324073
  • 718699
  • 1105357
  • 605522
Bowtie2 (v2.0.6)
  • 0.005
  • 00:28:00
  • 2942834
  • 7057166
  • 2025720
  • 917115
  • 1974401
  • 143689
  • 968433
  • 773425
  • 393112
  • 235264
Novoalign (v2.06.09)
  • 8.07
  • 23:59:00
  • 9999973
  • 27
  • 9334497
  • 665476
  • 8699126
  • 202456
  • 1300847
  • 463020
  • 930545
  • 273279
BWA (v0.5.8)
  • 2.44
  • 13:16:00
  • 9999951
  • 49
  • 9997807
  • 2144
  • 8498793
  • 2144
  • 1501158
  • 0
  • 691090
  • 0
Bowtie (v0.12.7)
  • 2.62
  • 09:45:00
  • 9999951
  • 49
  • 9999951
  • 0
  • 8469649
  • 0
  • 1503302
  • 0
  • 691090
  • 0
Note : highlighted lines are the mapper/release which brought you here.