MapDeCoDe Helping you find the best tools for your NGS mapping tasks.
H3
Description of the H3 dataset :
- Description : 10 millions single end read. Mutations were added using an in house perl script using the H0 data set as reference.
- Species : HG37.1
- Simulated using : wgsim v0.3.0
- Number of reads : 10000000
- Read length : 40
- Read pairing : Single End
- Minimum insert size :
- Maximum insert size :
- Maximum mismatches : 3
- Maximum number of indels : 0
- Maximum indel size : 0
- Maximum number of N per read : 10
Results visualisation
Mapped reads
Unique hits
Multiple hits
Rare hits
Results table
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GEM (v2) |
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PerM (v0.3.9) |
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GASSST (v1.28) |
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SSAHA2 (v2.5.2) |
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BFAST (v0.6.5) |
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Bowtie2 (v2.0.6) |
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Novoalign (v2.06.09) |
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BWA (v0.5.8) |
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Bowtie (v0.12.7) |
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