Description of the H0 dataset :

  • Description : The dataset H0 is composed of 10 millions reads of length 40bps. H0 contains 49 reads with N. The quality file H0.fq associated to the read file H0.fa contains quality J for all reads and all positions.
  • Species : HG37.1
  • Simulated using : wgsim v0.3.0
  • Number of reads : 10000000
  • Read length : 40
  • Read pairing : Single End
  • Minimum insert size :
  • Maximum insert size :
  • Maximum mismatches : 0
  • Maximum number of indels : 0
  • Maximum indel size : 0
  • Maximum number of N per read : 10

Results visualisation

Mapped reads
Unique hits
Multiple hits
Rare hits

Results table

To see the command line used for this test, hover on the tool's name.
Name
GEM (v2)
  • N/A
  • N/A
  • 9999998
  • 2
  • 9999914
  • 84
  • 8877108
  • 3
  • 1122980
  • 81
  • 594089
  • 1
MPScan (v1.0)
  • 2.67
  • 01:20:00
  • 9999974
  • 26
  • 9999974
  • 0
  • 8877081
  • 0
  • 1122983
  • 0
  • 594091
  • 0
PerM (v0.3.9)
  • 13.77
  • 13:05:00
  • 9884129
  • 115871
  • 9884125
  • 4
  • 8877068
  • 3
  • 1007061
  • 1
  • 594082
  • 4
GASSST (v1.28)
  • 57.93
  • 08:46:00
  • 9999951
  • 49
  • 9999897
  • 54
  • 8877061
  • 0
  • 1122890
  • 54
  • 594094
  • 1
SSAHA2 (v2.5.2)
  • 9.6
  • 23:59:00
  • 9964125
  • 35875
  • 9770914
  • 193211
  • 8886204
  • 9847
  • 1077921
  • 183364
  • 603193
  • 23258
BFAST (v0.6.5)
  • 9.68
  • 15:02:00
  • 9273668
  • 726332
  • 9253642
  • 20026
  • 8840305
  • 9193
  • 433363
  • 10833
  • 433035
  • 20026
SOAPaligner soap2 (v2.20)
  • 51.87
  • 00:56:00
  • 9999951
  • 49
  • 9996385
  • 3566
  • 8877061
  • 0
  • 1122890
  • 3566
  • 594090
  • 0
Bowtie (v0.12.7)
  • 1.2
  • 02:41:00
  • 9999951
  • 49
  • 9999951
  • 0
  • 8877061
  • 0
  • 1122890
  • 0
  • 594089
  • 0
Novoalign (v2.06.09)
  • 8.12
  • 12:48:00
  • 9999368
  • 632
  • 9999368
  • 0
  • 8877101
  • 0
  • 1122267
  • 0
  • 594096
  • 0
BWA (v0.5.8)
  • 2.18
  • 01:13:00
  • 9999951
  • 49
  • 9999951
  • 0
  • 8877061
  • 0
  • 1122890
  • 0
  • 594089
  • 0
Note : highlighted lines are the mapper/release which brought you here.