Description of the H1 dataset :

  • Description : The dataset H1 is composed of 10 millions reads of length 40bps. H1 is built from H0 by adding exactly one mismatch to each read. H1 contains 49 reads with N. The quality file H1.fq associated to the read file H1.fa contains quality J for all reads and all positions.
  • Species : HG37.1
  • Simulated using : wgsim v0.3.0
  • Number of reads : 10000000
  • Read length : 40
  • Read pairing : Single End
  • Minimum insert size :
  • Maximum insert size :
  • Maximum mismatches : 1
  • Maximum number of indels : 0
  • Maximum indel size : 0
  • Maximum number of N per read : 10

Results visualisation

Mapped reads
Unique hits
Multiple hits
Rare hits

Results table

To see the command line used for this test, hover on the tool's name.
Name
GEM (v2)
  • 4.2
  • 00:47:00
  • 9999984
  • 16
  • 9622971
  • 377013
  • 8815969
  • 86731
  • 1184015
  • 290282
  • 780421
  • 150196
PerM (v0.3.9)
  • 13.82
  • 08:17:00
  • 9864096
  • 135904
  • 9864092
  • 4
  • 8741350
  • 3
  • 1122746
  • 1
  • 631063
  • 1
GASSST (v1.28)
  • 57.93
  • 23:59:00
  • 9999949
  • 51
  • 9999795
  • 154
  • 8724019
  • 1
  • 1275930
  • 153
  • 9361581
  • 8
SSAHA2 (v2.5.2)
  • 9.6
  • 23:59:00
  • 9995678
  • 4322
  • 8689883
  • 1305795
  • 8887105
  • 838477
  • 1108573
  • 467318
  • 9685014
  • 1121974
SOAPaligner soap2 (v2.20)
  • 8.68
  • 00:13:00
  • 9999561
  • 439
  • 9620493
  • 379068
  • 8830330
  • 89407
  • 1169231
  • 289661
  • 770823
  • 149695
Bowtie2 (v2.0.6)
  • 0.005
  • 00:38:00
  • 9999959
  • 41
  • 9495584
  • 504375
  • 7922263
  • 0
  • 2077696
  • 504375
  • 792329
  • 1
Bowtie (v0.12.7)
  • 2.51
  • 03:42:00
  • 9999951
  • 49
  • 9999951
  • 0
  • 8741343
  • 0
  • 1258608
  • 0
  • 631069
  • 0
Novoalign (v2.06.09)
  • 8.12
  • 11:31:00
  • 9999995
  • 5
  • 9620970
  • 379025
  • 8830766
  • 89383
  • 1169229
  • 289642
  • 770829
  • 149686
BWA (v0.5.8)
  • 2.18
  • 01:37:00
  • 9999951
  • 49
  • 9999957
  • 394
  • 8741737
  • 394
  • 1258214
  • 0
  • 631069
  • 0
Note : highlighted lines are the mapper/release which brought you here.