Description of the H2 dataset :

  • Description : The dataset H2 is composed of 10 millions reads of length 40bps. H2 is built from H0 by adding exactly two mismatches to each read. H2 contains 49 reads with N. The quality file H2.fq associated to the read file H2.fa contains quality J for all reads and all positions.
  • Species : HG37.1
  • Simulated using : wgsim v0.3.0
  • Number of reads : 10000000
  • Read length : 40
  • Read pairing : Single End
  • Minimum insert size :
  • Maximum insert size :
  • Maximum mismatches : 2
  • Maximum number of indels : 0
  • Maximum indel size : 0
  • Maximum number of N per read : 10

Results visualisation

Mapped reads
Unique hits
Multiple hits
Rare hits

Results table

To see the command line used for this test, hover on the tool's name.
Name
GEM (v2)
  • 4.2
  • 01:24:00
  • 9999968
  • 32
  • 9487837
  • 512131
  • 8675507
  • 82264
  • 1324461
  • 429867
  • 872494
  • 203149
PerM (v0.3.9)
  • 13.82
  • 05:30:00
  • 9840669
  • 159331
  • 9840664
  • 5
  • 8617142
  • 3
  • 1223527
  • 2
  • 662458
  • 0
GASSST (v1.28)
  • 57.93
  • 17:21:00
  • 9827251
  • 172749
  • 9800031
  • 27220
  • 8417845
  • 8704
  • 1409406
  • 18516
  • 667952
  • 5906
SSAHA2 (v2.5.2)
  • 9.6
  • 23:59:00
  • 9999212
  • 788
  • 7521037
  • 2478175
  • 8788542
  • 1752310
  • 1210670
  • 725865
  • 957514
  • 537996
SOAPaligner soap2 (v2.20)
  • 6.99
  • 00:46:00
  • 9999509
  • 491
  • 9468577
  • 530932
  • 8765791
  • 149099
  • 1233718
  • 381833
  • 845388
  • 203869
Bowtie2 (v2.0.6)
  • 0.005
  • 00:40:00
  • 5364896
  • 4635104
  • 4273649
  • 1091247
  • 3904427
  • 101214
  • 1460469
  • 990033
  • 538808
  • 181872
Bowtie (v0.12.7)
  • 2.48
  • 05:45:00
  • 9999951
  • 49
  • 9999951
  • 0
  • 8617135
  • 0
  • 1382816
  • 0
  • 662465
  • 0
Novoalign (v2.06.09)
  • 8.08
  • 17:53:00
  • 9999997
  • 3
  • 9469083
  • 530914
  • 8766268
  • 149096
  • 1233729
  • 381818
  • 845396
  • 203854
BWA (v0.5.8)
  • 2.19
  • 02:58:00
  • 9999952
  • 48
  • 9999952
  • 0
  • 8617136
  • 0
  • 1382816
  • 0
  • 662465
  • 0
Note : highlighted lines are the mapper/release which brought you here.