Description of the Hl2 dataset :

  • Description : The dataset Hl2 is composed of 10 millions reads of length 100bps. Hl2 is built from Hl0 by adding exactly two mismatches to each read. Hl2 contains 112 reads with N. The quality file Hl2.fq associated to the read file Hl2.fa contains quality J for all reads and all positions.
  • Species : HG37.1
  • Simulated using : wgsim v0.3.0
  • Number of reads : 10000000
  • Read length : 100
  • Read pairing : Single End
  • Minimum insert size :
  • Maximum insert size :
  • Maximum mismatches : 2
  • Maximum number of indels : 0
  • Maximum indel size : 0
  • Maximum number of N per read : 10

Results visualisation

Mapped reads
Unique hits
Multiple hits
Rare hits

Results table

To see the command line used for this test, hover on the tool's name.
Name
GEM (v2)
  • 4.2
  • 00:16:00
  • 9999986
  • 14
  • 9960115
  • 39871
  • 9649121
  • 11398
  • 350865
  • 28473
  • 305598
  • 21534
PerM (v0.3.9)
  • 14.09
  • 06:08:00
  • 9996085
  • 3915
  • 9996084
  • 1
  • 9637636
  • 0
  • 358449
  • 1
  • 285093
  • 0
GASSST (v1.28)
  • 16.17
  • 23:59:00
  • 9999830
  • 170
  • 9998717
  • 1113
  • 9635259
  • 1049
  • 364571
  • 64
  • 286723
  • 37
SSAHA2 (v2.5.2)
  • 10.8
  • 23:59:00
  • 9980512
  • 19488
  • 4741981
  • 5238531
  • 9639481
  • 5041044
  • 341031
  • 197487
  • 303640
  • 173488
SOAPaligner soap2 (v2.20)
  • 5.84
  • 01:24:00
  • 9999687
  • 313
  • 9958180
  • 41507
  • 9651149
  • 13714
  • 348538
  • 27793
  • 304009
  • 21185
Bowtie2 (v2.0.6)
  • 0.005
  • 04:47:00
  • 9991218
  • 8782
  • 9683649
  • 307569
  • 8543392
  • 2170
  • 1447826
  • 305399
  • 688783
  • 4173
Bowtie (v0.12.7)
  • 2.31
  • 01:16:00
  • 9999888
  • 112
  • 9999888
  • 0
  • 9637636
  • 0
  • 362252
  • 0
  • 285093
  • 0
Novoalign (v2.06.09)
  • 8.03
  • 03:40:00
  • 10000000
  • 0
  • 9958498
  • 41502
  • 9651447
  • 13710
  • 348553
  • 27792
  • 304023
  • 21184
BWA (v0.5.8)
  • 2.23
  • 00:33:00
  • 9999888
  • 112
  • 9999888
  • 0
  • 9637636
  • 0
  • 362252
  • 0
  • 285092
  • 0
BFAST (v0.6.5)
  • 9.68
  • 23:59:00
  • 1364
  • 9998636
  • 0
  • 1364
  • 1016
  • 1016
  • 348
  • 348
  • 347
  • 347
Note : highlighted lines are the mapper/release which brought you here.