Description of the Hl1 dataset :

  • Description : The dataset Hl1 is composed of 10 millions reads of length 100bps. Hl1 is built from Hl0 by adding exactly one mismatch to each read. Hl1 contains 112 reads with N. The quality file Hl1.fq associated to the read file Hl1.fa contains quality J for all reads and all positions.
  • Species : HG37.1
  • Simulated using : wgsim v0.3.0
  • Number of reads : 10000000
  • Read length : 1000
  • Read pairing : Single End
  • Minimum insert size :
  • Maximum insert size :
  • Maximum mismatches : 1
  • Maximum number of indels : 0
  • Maximum indel size : 0
  • Maximum number of N per read : 10

Results visualisation

Mapped reads
Unique hits
Multiple hits
Rare hits

Results table

To see the command line used for this test, hover on the tool's name.
Name
GEM (v2)
  • 4.2
  • 00:12:00
  • 9999994
  • 6
  • 9972022
  • 27972
  • 9659127
  • 10338
  • 340867
  • 17634
  • 294563
  • 14542
PerM (v0.3.9)
  • 14.09
  • 05:24:00
  • 9996481
  • 3519
  • 9996480
  • 1
  • 9648694
  • 0
  • 347787
  • 1
  • 280598
  • 0
GASSST (v1.28)
  • 16.2
  • 23:59:00
  • 9999856
  • 144
  • 9999847
  • 9
  • 9647406
  • 0
  • 352450
  • 9
  • 281553
  • 2
SSAHA2 (v2.5.2)
  • 10.8
  • 23:59:00
  • 9982770
  • 17230
  • 9627498
  • 355272
  • 9647162
  • 319900
  • 335608
  • 35372
  • 293492
  • 28048
BFAST (v0.6.5)
  • 9.68
  • 18:01:00
  • 8719316
  • 1280648
  • 8717562
  • 1754
  • 8514719
  • 547
  • 204597
  • 1207
  • 204056
  • 1207
SOAPaligner soap2 (v2.20)
  • 6.09
  • 00:13:00
  • 9999513
  • 487
  • 9970940
  • 28573
  • 9659387
  • 11069
  • 340126
  • 17504
  • 293938
  • 14446
Bowtie2 (v2.0.6)
  • 0.005
  • 04:45:00
  • 9999999
  • 1
  • 9946707
  • 53292
  • 8424764
  • 0
  • 1575235
  • 53292
  • 701694
  • 0
Bowtie (v0.12.7)
  • 2.31
  • 00:24:00
  • 9999888
  • 112
  • 9999888
  • 0
  • 9648695
  • 0
  • 351193
  • 0
  • 280598
  • 0
Novoalign (v2.06.09)
  • 8.03
  • 03:02:00
  • 10000000
  • 0
  • 9971444
  • 28556
  • 9659847
  • 11053
  • 340153
  • 17503
  • 293964
  • 14445
BWA (v0.5.8)
  • 2.23
  • 00:27:00
  • 9999888
  • 112
  • 9999888
  • 0
  • 9648695
  • 0
  • 351193
  • 0
  • 280598
  • 0
Note : highlighted lines are the mapper/release which brought you here.