Description of the Hl0 dataset :

  • Description : The dataset Hl0 is composed of 10 millions reads of length 100bps. Hl0 contains 113 reads with N. The quality file Hl0.fq associated to the read file Hl0.fa contains quality J for all reads and all positions.
  • Species : HG37.1
  • Simulated using : wgsim v0.3.0
  • Number of reads : 10000000
  • Read length : 100
  • Read pairing : Single End
  • Minimum insert size :
  • Maximum insert size :
  • Maximum mismatches : 0
  • Maximum number of indels : 0
  • Maximum indel size : 0
  • Maximum number of N per read : 10

Results visualisation

Mapped reads
Unique hits
Multiple hits
Rare hits

Results table

To see the command line used for this test, hover on the tool's name.
Name
GEM (v2)
  • 4.2
  • 00:10:00
  • 10000000
  • 0
  • 9999999
  • 1
  • 9661553
  • 0
  • 338447
  • 1
  • 274581
  • 0
PerM (v0.3.9)
  • 14.09
  • 06:25:00
  • 9996793
  • 3207
  • 9996792
  • 1
  • 9661452
  • 0
  • 335341
  • 1
  • 274571
  • 0
GASSST (v1.28)
  • 58.51
  • 19:56:00
  • 9999855
  • 145
  • 9999837
  • 18
  • 9661423
  • 4
  • 338432
  • 14
  • 274571
  • 4
SSAHA2 (v2.5.2)
  • 10.8
  • 23:59:00
  • 9999697
  • 303
  • 9964615
  • 35082
  • 9662407
  • 21947
  • 337290
  • 13135
  • 274202
  • 1909
BFAST (v0.6.5)
  • 9.68
  • 23:59:00
  • 8625759
  • 1374241
  • 8625570
  • 189
  • 8428637
  • 72
  • 197122
  • 117
  • 197043
  • 117
SOAPaligner soap2 (v2.20)
  • 7.54
  • 00:11:00
  • 9999895
  • 105
  • 9999895
  • 0
  • 9661459
  • 0
  • 338436
  • 0
  • 274571
  • 0
Bowtie2 (v2.0.6)
  • 0.005
  • 04:51:00
  • 9999999
  • 1
  • 9950906
  • 49093
  • 8304335
  • 0
  • 1695664
  • 49093
  • 711749
  • 0
Bowtie (v0.12.7)
  • 1.16
  • 00:17:00
  • 9999888
  • 112
  • 9999888
  • 0
  • 9661452
  • 0
  • 338436
  • 0
  • 274571
  • 0
Novoalign (v2.06.09)
  • 8.04
  • 02:26:00
  • 9999998
  • 2
  • 9999981
  • 17
  • 9661553
  • 9
  • 338445
  • 8
  • 274581
  • 7
BWA (v0.5.8)
  • 2.23
  • 00:27:00
  • 9999888
  • 112
  • 9999888
  • 0
  • 9661452
  • 0
  • 338436
  • 0
  • 274571
  • 0
Note : highlighted lines are the mapper/release which brought you here.