Description of the Hp3i dataset :

  • Description : The dataset Hp3i is composed of 5 millions paired of reads of length 103 bps. Hp3i is built from Hp0 by adding 3 bps to each read. Hp3i does not contain any read with N. The quality file Hp3i.fq associated to the read file Hp3i.fa contains quality I for all reads and all positions.
  • Species : HG37.1
  • Simulated using : wgsim v0.3.0
  • Number of reads : 5000000
  • Read length : 103
  • Read pairing : Paired End
  • Minimum insert size : 250
  • Maximum insert size : 750
  • Maximum mismatches : 0
  • Maximum number of indels : 1
  • Maximum indel size : 3
  • Maximum number of N per read : 0

Results visualisation

Mapped reads
Unique hits
Multiple hits
Rare hits

Results table

To see the command line used for this test, hover on the tool's name.
Name
GEM (v2)
  • 4206
  • 00:22:00
  • 4998623
  • 1977
  • 4982440
  • 16183
  • 4762647
  • 3400
  • 235976
  • 12783
  • N/A
  • N/A
Bowtie2 (v2.0.6)
  • 5
  • 03:40:00
  • 4967817
  • 90
  • 4663566
  • 304251
  • 4489168
  • 109828
  • 478649
  • 194423
  • N/A
  • N/A
Novoalign (v2.06.09)
  • 8045
  • 23:59:00
  • 5000000
  • 0
  • 4811268
  • 188732
  • 4903128
  • 129924
  • 96872
  • 58808
  • N/A
  • N/A
BWA (v0.5.8)
  • 3513
  • 07:27:00
  • 4991488
  • 8512
  • 4583781
  • 407707
  • 4991488
  • 407707
  • 0
  • 0
  • N/A
  • N/A
Note : highlighted lines are the mapper/release which brought you here.