Description of the Hp3d dataset :

  • Description : The dataset Hp3d is composed of 5 millions paired of reads of length 97 bps. Hp3d is built from Hp0 by deleting 3 bps to each read. Hp3d does not contain any read with N. The quality file Hp3d.fq associated to the read file Hp3d.fa contains quality I for all reads and all positions.
  • Species : HG37.1
  • Simulated using : wgsim v0.3.0
  • Number of reads : 5000000
  • Read length : 97
  • Read pairing : Paired End
  • Minimum insert size : 250
  • Maximum insert size : 750
  • Maximum mismatches : 0
  • Maximum number of indels : 1
  • Maximum indel size : 3
  • Maximum number of N per read : 0

Results visualisation

Mapped reads
Unique hits
Multiple hits
Rare hits

Results table

To see the command line used for this test, hover on the tool's name.
Name
GEM (v2)
  • 4205
  • 00:22:00
  • 4996615
  • 3385
  • 4986512
  • 10103
  • 4774296
  • 3592
  • 222319
  • 6511
  • N/A
  • N/A
Bowtie2 (v2.0.6)
  • 5
  • 06:39:00
  • 4971918
  • 73
  • 4678438
  • 293480
  • 4502113
  • 105420
  • 469805
  • 188060
  • N/A
  • N/A
Novoalign (v2.06.09)
  • 8045
  • 23:59:00
  • 5000000
  • 0
  • 4518742
  • 481258
  • 4900845
  • 418297
  • 99155
  • 62961
  • N/A
  • N/A
BWA (v0.5.8)
  • 3631
  • 08:00:00
  • 4998175
  • 1825
  • 4326276
  • 671899
  • 4998175
  • 671899
  • 0
  • 0
  • N/A
  • N/A
Note : highlighted lines are the mapper/release which brought you here.