Description of the Hp3 dataset :

  • Description : The dataset Hp3 is composed of 5 millions paired of reads of length 100 bps. Hp3 does not contain any read with N. The quality file Hp3.fq associated to the read file Hp3.fa contains quality I for all reads and all positions.
  • Species : HG37.1
  • Simulated using : wgsim v0.3.0
  • Number of reads : 5000000
  • Read length : 100
  • Read pairing : Paired End
  • Minimum insert size : 250
  • Maximum insert size : 750
  • Maximum mismatches : 3
  • Maximum number of indels : 0
  • Maximum indel size : 0
  • Maximum number of N per read : 0

Results visualisation

Mapped reads
Unique hits
Multiple hits
Rare hits

Results table

To see the command line used for this test, hover on the tool's name.
Name
GEM (v2)
  • 4207
  • 00:42:00
  • 4998723
  • 1277
  • 4987080
  • 11643
  • 4726081
  • 2053
  • 272642
  • 9590
  • N/A
  • N/A
SSAHA2 (v2.5.2)
  • 10803
  • 15:18:00
  • 4843084
  • 156916
  • 3971774
  • 871310
  • 4843084
  • 871310
  • 0
  • 0
  • N/A
  • N/A
Bowtie2 (v2.0.6)
  • 5.3
  • 05:49:00
  • 4976825
  • 23175
  • 4897777
  • 79048
  • 4615444
  • 2211
  • 361381
  • 76837
  • N/A
  • N/A
Bowtie (v0.12.7)
  • 3023
  • 08:52:00
  • 4999653
  • 347
  • 4899785
  • 99868
  • 4898962
  • 226
  • 100691
  • 99642
  • N/A
  • N/A
Novoalign (v2.06.09)
  • 8036
  • 02:24:00
  • 4999860
  • 140
  • 4352153
  • 647707
  • 4900936
  • 583472
  • 98924
  • 64235
  • N/A
  • N/A
BWA (v0.5.8)
  • 3207
  • 00:58:00
  • 5000000
  • 0
  • 4939674
  • 60326
  • 5000000
  • 60326
  • 0
  • 0
  • N/A
  • N/A
Note : highlighted lines are the mapper/release which brought you here.