Description of the Hp2 dataset :

  • Description : The dataset Hp2 is composed of 5 millions paired of reads of length 100 bps. Hp2 does not contain any read with N. The quality file Hp2.fq associated to the read file Hp2.fa contains quality I for all reads and all positions.
  • Species : HG37.1
  • Simulated using : wgsim v0.3.0
  • Number of reads : 5000000
  • Read length : 100
  • Read pairing : Paired End
  • Minimum insert size : 250
  • Maximum insert size : 750
  • Maximum mismatches : 2
  • Maximum number of indels : 0
  • Maximum indel size : 0
  • Maximum number of N per read : 0

Results visualisation

Mapped reads
Unique hits
Multiple hits
Rare hits

Results table

To see the command line used for this test, hover on the tool's name.
Name
SOAPaligner soap2 (v2.20)
  • 5662
  • 00:46:00
  • 4999523
  • 477
  • 4940453
  • 59070
  • 4899668
  • 47
  • 99855
  • 59023
  • N/A
  • N/A
GEM (v2)
  • 4207
  • 00:19:00
  • 4999180
  • 820
  • 4990134
  • 9046
  • 4735048
  • 1776
  • 264132
  • 7270
  • N/A
  • N/A
SSAHA2 (v2.5.2)
  • 10803
  • 15:38:00
  • 4869282
  • 130718
  • 4279322
  • 589960
  • 4869282
  • 589960
  • 0
  • 0
  • N/A
  • N/A
Bowtie2 (v2.0.6)
  • 5.3
  • 02:55:00
  • 4994859
  • 5141
  • 4919383
  • 75476
  • 4606507
  • 888
  • 388352
  • 74588
  • N/A
  • N/A
Bowtie (v0.12.7)
  • 3004
  • 01:07:00
  • 4999641
  • 359
  • 4901048
  • 98593
  • 4900227
  • 224
  • 99414
  • 98369
  • N/A
  • N/A
Novoalign (v2.06.09)
  • 8036
  • 02:29:00
  • 4999954
  • 46
  • 4548440
  • 451514
  • 4902098
  • 389789
  • 97856
  • 61725
  • N/A
  • N/A
BWA (v0.5.8)
  • 3162
  • 00:30:00
  • 5000000
  • 0
  • 4940763
  • 59237
  • 5000000
  • 59237
  • 0
  • 0
  • N/A
  • N/A
Note : highlighted lines are the mapper/release which brought you here.