Description of the Hp1 dataset :

  • Description : The dataset Hp1 is composed of 5 millions paired of reads of length 100 bps. Hp1 does not contain any read with N. The quality file Hp1.fq associated to the read file Hp1.fa contains quality I for all reads and all positions.
  • Species : HG37.1
  • Simulated using : wgsim v0.3.0
  • Number of reads : 5000000
  • Read length : 100
  • Read pairing : Paired End
  • Minimum insert size : 250
  • Maximum insert size : 750
  • Maximum mismatches : 1
  • Maximum number of indels : 0
  • Maximum indel size : 0
  • Maximum number of N per read : 0

Results visualisation

Mapped reads
Unique hits
Multiple hits
Rare hits

Results table

To see the command line used for this test, hover on the tool's name.
Name
Novoalign (v2.06.09)
  • 8036
  • 03:13:00
  • 4999985
  • 15
  • 4745504
  • 254481
  • 4903299
  • 195008
  • 96686
  • 59473
  • N/A
  • N/A
BWA (v0.5.8)
  • 3158
  • 00:31:00
  • 5000000
  • 0
  • 4941933
  • 58067
  • 5000000
  • 58067
  • 0
  • 0
  • N/A
  • N/A
Bowtie2 (v2.0.6)
  • 5.3
  • 03:13:00
  • 4999979
  • 21
  • 4966461
  • 33518
  • 4587718
  • 8
  • 412261
  • 33510
  • N/A
  • N/A
Bowtie (v0.12.7)
  • 3001
  • 00:20:00
  • 4999613
  • 387
  • 4902456
  • 97157
  • 4901635
  • 194
  • 97978
  • 96963
  • N/A
  • N/A
GEM (v2)
  • 4206
  • 00:16:00
  • 4999627
  • 373
  • 4993845
  • 5782
  • 4698612
  • 1670
  • 301015
  • 4112
  • N/A
  • N/A
SSAHA2 (v2.5.2)
  • 10807
  • 16:50:00
  • 4877259
  • 122741
  • 4576212
  • 301047
  • 4877259
  • 301047
  • 0
  • 0
  • N/A
  • N/A
SOAPaligner soap2 (v2.20)
  • 5662
  • 00:11:00
  • 4999560
  • 440
  • 4941562
  • 57998
  • 4901163
  • 16
  • 98397
  • 57982
  • N/A
  • N/A
Note : highlighted lines are the mapper/release which brought you here.