Description of the Hp0 dataset :

  • Description : The dataset Hp0 is composed of 5 millions pairs of reads of length 100 bps. Hp0 does not contain any read with N. The quality file Hp0.fq associated to the read file Hp0.fa contains quality I for all reads and all positions.
  • Species : HG37.1
  • Simulated using : wgsim v0.3.0
  • Number of reads : 5000000
  • Read length : 100
  • Read pairing : Paired End
  • Minimum insert size : 250
  • Maximum insert size : 750
  • Maximum mismatches : 0
  • Maximum number of indels : 0
  • Maximum indel size : 0
  • Maximum number of N per read : 0

Results visualisation

Mapped reads
Unique hits
Multiple hits
Rare hits

Results table

To see the command line used for this test, hover on the tool's name.
Name
SOAPaligner soap2 (v2.20)
  • 2764
  • 00:33:00
  • 4999999
  • 2
  • 4942955
  • 57043
  • 4902987
  • 0
  • 97011
  • 57043
  • N/A
  • N/A
Bowtie2 (v2.0.6)
  • 5.3
  • 06:49:00
  • 4999991
  • 9
  • 4966002
  • 33989
  • 4564057
  • 7
  • 435934
  • 33982
  • N/A
  • N/A
BWA (v0.5.8)
  • 3154
  • 00:37:00
  • 5000000
  • 0
  • 4942992
  • 57008
  • 5000000
  • 57007
  • 0
  • 0
  • N/A
  • N/A
PerM (v0.3.9)
  • N/A
  • N/A
  • 4942407
  • 57593
  • 4918854
  • 23553
  • 2502327
  • 23553
  • 2440080
  • 0
  • N/A
  • N/A
SSAHA2 (v2.5.2)
  • 10805
  • 22:12:00
  • 4903892
  • 96108
  • 4879854
  • 24038
  • 4903892
  • 24038
  • 0
  • 0
  • N/A
  • N/A
Bowtie (v0.12.7)
  • 1851
  • 00:22:00
  • 4999965
  • 35
  • 4903983
  • 95982
  • 4903009
  • 21
  • 96956
  • 95959
  • N/A
  • N/A
GEM (v2)
  • 4205
  • 00:12:00
  • 5000000
  • 0
  • 4999999
  • 1
  • 4749126
  • 1
  • 250874
  • 0
  • N/A
  • N/A
Novoalign (v2.06.09)
  • 8038
  • 03:41:00
  • 5000000
  • 0
  • 4942735
  • 57265
  • 4904315
  • 65
  • 95685
  • 57200
  • N/A
  • N/A
Note : highlighted lines are the mapper/release which brought you here.