Description of the Hl3i dataset :

  • Description : The dataset Hl3i is composed of 10 millions reads of length 103 bps. Hl3i is built from Hl0 by adding 3 bps to each read. Hl3i contains 112 reads with N
  • Species : HG37.1
  • Simulated using : wgsim v0.3.0
  • Number of reads : 10000000
  • Read length : 103
  • Read pairing : Single End
  • Minimum insert size :
  • Maximum insert size :
  • Maximum mismatches : 0
  • Maximum number of indels : 1
  • Maximum indel size : 3
  • Maximum number of N per read : 10

Results visualisation

Mapped reads
Unique hits
Multiple hits
Rare hits

Results table

To see the command line used for this test, hover on the tool's name.
Name
GEM (v2)
  • 4.2
  • 00:31:00
  • 9993661
  • 6339
  • 9726457
  • 267204
  • 9655473
  • 226349
  • 338188
  • 40855
  • 290565
  • 20424
GASSST (v1.28)
  • 38.99
  • 23:59:00
  • 9999772
  • 228
  • 4861553
  • 5138219
  • 9641948
  • 4952486
  • 357824
  • 185733
  • 286452
  • 148189
Bowtie2 (v2.0.6)
  • 0.005
  • 05:13:00
  • 9998044
  • 1956
  • 4789809
  • 5208235
  • 8564612
  • 4363767
  • 1433432
  • 844468
  • 690340
  • 353180
Novoalign (v2.06.09)
  • 8.04
  • 23:59:00
  • 10000000
  • 0
  • 4935337
  • 5064663
  • 9670373
  • 4893927
  • 329627
  • 170736
  • 278823
  • 144517
BWA (v0.5.8)
  • 2.39
  • 20:40:00
  • 9277593
  • 722407
  • 8830900
  • 446693
  • 8922441
  • 415923
  • 355152
  • 30770
  • 355152
  • 30770
Note : highlighted lines are the mapper/release which brought you here.