Description of the Hl3d dataset :

  • Description : The dataset Hl3d is composed of 10 millions reads of length 97 bps. Hl3d is built from Hl0 by deleting 3 bps to each read. Hl3d contains 111 reads with N
  • Species : HG37.1
  • Simulated using : wgsim v0.3.0
  • Number of reads : 10000000
  • Read length : 97
  • Read pairing : Single End
  • Minimum insert size :
  • Maximum insert size :
  • Maximum mismatches : 0
  • Maximum number of indels : 1
  • Maximum indel size : 3
  • Maximum number of N per read : 10

Results visualisation

Mapped reads
Unique hits
Multiple hits
Rare hits

Results table

To see the command line used for this test, hover on the tool's name.
Name
Novoalign (v2.06.09)
  • 8.03
  • 16:33:00
  • 10000000
  • 0
  • 4977654
  • 5052346
  • 9672822
  • 4874142
  • 327178
  • 178204
  • 294038
  • 160721
GEM (v2)
  • 4.2
  • 00:35:00
  • 9990576
  • 9424
  • 9298064
  • 692512
  • 9609545
  • 624334
  • 381031
  • 68178
  • 325803
  • 42429
GASSST (v1.28)
  • 38.93
  • 21:36:00
  • 1084244
  • 8915756
  • 463559
  • 620685
  • 1002264
  • 564394
  • 81980
  • 56291
  • 60548
  • 42479
BWA (v0.5.8)
  • 2.4
  • 20:11:00
  • 9860622
  • 139378
  • 8991894
  • 868728
  • 9483098
  • 792492
  • 377524
  • 76236
  • 377524
  • 76236
Bowtie2 (v2.0.6)
  • 0.005
  • 05:08:00
  • 9997635
  • 2365
  • 4864789
  • 5132846
  • 8579108
  • 4311523
  • 1418527
  • 821323
  • 696089
  • 351438
Note : highlighted lines are the mapper/release which brought you here.