Description of the Hl3 dataset :

  • Description : The dataset Hl3 is composed of 10 millions reads of length 100bps. Hl3 is built from Hl0 by adding exactly three mismatches to each read. Hl3 contains 111 reads with N. The quality file Hl3.fq associated to the read file Hl3.fa contains quality ! for all reads and all positions.
  • Species : HG37.1
  • Simulated using : wgsim v0.3.0
  • Number of reads : 10000000
  • Read length : 100
  • Read pairing : Single End
  • Minimum insert size :
  • Maximum insert size :
  • Maximum mismatches : 3
  • Maximum number of indels : 0
  • Maximum indel size : 0
  • Maximum number of N per read : 10

Results visualisation

Mapped reads
Unique hits
Multiple hits
Rare hits

Results table

To see the command line used for this test, hover on the tool's name.
Name
GEM (v2)
  • 4.2
  • 00:33:00
  • 9999982
  • 18
  • 9952988
  • 46994
  • 9629995
  • 6106
  • 369987
  • 40888
  • 312460
  • 21090
PerM (v0.3.9)
  • 14.09
  • 05:20:00
  • 9995647
  • 4353
  • 9995646
  • 1
  • 9626827
  • 0
  • 368820
  • 1
  • 289442
  • 0
GASSST (v1.28)
  • 58.52
  • 23:59:00
  • 9999588
  • 412
  • 9995752
  • 3836
  • 8740108
  • 2900
  • 1259480
  • 936
  • 8370591
  • 3239
SSAHA2 (v2.5.2)
  • 10.79
  • 23:59:00
  • 9962456
  • 37544
  • 8932911
  • 1029545
  • 9615720
  • 948459
  • 346736
  • 81086
  • 311242
  • 66758
BFAST (v0.6.5)
  • 9.68
  • N/A
  • 8917080
  • 1082920
  • 8912554
  • 4526
  • 8704890
  • 2634
  • 212190
  • 1892
  • 211473
  • 1888
Bowtie2 (v2.0.6)
  • 0.005
  • 02:09:00
  • 9998413
  • 1587
  • 9379943
  • 618470
  • 7316694
  • 373
  • 2681719
  • 618097
  • 844899
  • 728
Bowtie (v0.12.7)
  • 2.32
  • 03:06:00
  • 9999888
  • 112
  • 9999888
  • 0
  • 9626828
  • 0
  • 373060
  • 0
  • 289442
  • 0
Novoalign (v2.06.09)
  • 8.03
  • 04:47:00
  • 10000000
  • 0
  • 9948271
  • 51729
  • 9643686
  • 16755
  • 356314
  • 34974
  • 310513
  • 24770
BWA (v0.5.8)
  • 2.23
  • 00:58:00
  • 9999889
  • 111
  • 9999889
  • 0
  • 9626829
  • 0
  • 373060
  • 0
  • 289442
  • 0
Note : highlighted lines are the mapper/release which brought you here.