MapDeCoDe Helping you find the best tools for your NGS mapping tasks.
Hl2
Description of the Hl2 dataset :
- Description : The dataset Hl2 is composed of 10 millions reads of length 100bps. Hl2 is built from Hl0 by adding exactly two mismatches to each read. Hl2 contains 112 reads with N. The quality file Hl2.fq associated to the read file Hl2.fa contains quality J for all reads and all positions.
- Species : HG37.1
- Simulated using : wgsim v0.3.0
- Number of reads : 10000000
- Read length : 100
- Read pairing : Single End
- Minimum insert size :
- Maximum insert size :
- Maximum mismatches : 2
- Maximum number of indels : 0
- Maximum indel size : 0
- Maximum number of N per read : 10
Results visualisation
Mapped reads
Unique hits
Multiple hits
Rare hits
Results table
Name |
|
|||||
---|---|---|---|---|---|---|
GEM (v2) |
|
|
|
|
|
|
PerM (v0.3.9) |
|
|
|
|
|
|
GASSST (v1.28) |
|
|
|
|
|
|
SSAHA2 (v2.5.2) |
|
|
|
|
|
|
SOAPaligner soap2 (v2.20) |
|
|
|
|
|
|
Bowtie2 (v2.0.6) |
|
|
|
|
|
|
Bowtie (v0.12.7) |
|
|
|
|
|
|
Novoalign (v2.06.09) |
|
|
|
|
|
|
BWA (v0.5.8) |
|
|
|
|
|
|
BFAST (v0.6.5) |
|
|
|
|
|
|