MapDeCoDe Helping you find the best tools for your NGS mapping tasks.
Metrics Here is a diagram of the the metrics evaluated on each mapping result.
Correctly Mapped Reads
Number of correctly mapped reads : a read is correctly mapped if its original position (the one where it has been drawn) is found within the results.
Duration of the run. Note that this only makes sense when runs are executed in a similar environment.
Incorrect Multiple Mappings
Number of reads mapped on multiple poisitions whose original position was not retrieved.
Incorrect Unique Mappings
Number of reads uniquely mapped whose returned position is incorrect.
Incorrectly Mapped Reads
Number of incorrectly mapped reads : a read is incorrectly mapped if its original position can not be found in the results.
Total number of mapped reads (both correct and incorrect).
Amount of memory (in Gb) used by the tool to process the run.
Multiple Mappings Reads
Total number of reads that were mapped more than once.
Rare Incorrectly Mapped Reads
Number of reads mapped between 2 and 10 times whose original position was not retrieved.
Rarely Mapped Reads
Total number of reads that were mapped between 2 and 10 times.
Uniquely Mapped Reads
Total number of reads uniquely mapped (ie : only one position was returned).
Number of unmapped reads.