MapDeCoDe Helping you find the best tools for your NGS mapping tasks.
Hl0
Description of the Hl0 dataset :
- Description : The dataset Hl0 is composed of 10 millions reads of length 100bps. Hl0 contains 113 reads with N. The quality file Hl0.fq associated to the read file Hl0.fa contains quality J for all reads and all positions.
- Species : HG37.1
- Simulated using : wgsim v0.3.0
- Number of reads : 10000000
- Read length : 100
- Read pairing : Single End
- Minimum insert size :
- Maximum insert size :
- Maximum mismatches : 0
- Maximum number of indels : 0
- Maximum indel size : 0
- Maximum number of N per read : 10
Results visualisation
Mapped reads
Unique hits
Multiple hits
Rare hits
Results table
Name |
|
|||||
---|---|---|---|---|---|---|
GEM (v2) |
|
|
|
|
|
|
PerM (v0.3.9) |
|
|
|
|
|
|
GASSST (v1.28) |
|
|
|
|
|
|
SSAHA2 (v2.5.2) |
|
|
|
|
|
|
BFAST (v0.6.5) |
|
|
|
|
|
|
SOAPaligner soap2 (v2.20) |
|
|
|
|
|
|
Bowtie2 (v2.0.6) |
|
|
|
|
|
|
Bowtie (v0.12.7) |
|
|
|
|
|
|
Novoalign (v2.06.09) |
|
|
|
|
|
|
BWA (v0.5.8) |
|
|
|
|
|
|