MapDeCoDe Helping you find the best tools for your NGS mapping tasks.
Hp3i
Description of the Hp3i dataset :
- Description : The dataset Hp3i is composed of 5 millions paired of reads of length 103 bps. Hp3i is built from Hp0 by adding 3 bps to each read. Hp3i does not contain any read with N. The quality file Hp3i.fq associated to the read file Hp3i.fa contains quality I for all reads and all positions.
- Species : HG37.1
- Simulated using : wgsim v0.3.0
- Number of reads : 5000000
- Read length : 103
- Read pairing : Paired End
- Minimum insert size : 250
- Maximum insert size : 750
- Maximum mismatches : 0
- Maximum number of indels : 1
- Maximum indel size : 3
- Maximum number of N per read : 0
Results visualisation
Mapped reads
Unique hits
Multiple hits
Rare hits
Results table
Name |
|
|||||
---|---|---|---|---|---|---|
GEM (v2) |
|
|
|
|
|
|
Bowtie2 (v2.0.6) |
|
|
|
|
|
|
Novoalign (v2.06.09) |
|
|
|
|
|
|
BWA (v0.5.8) |
|
|
|
|
|
|